CellSelector: Cell Selector

In satijalab/seurat: Tools for Single Cell Genomics

Cell Selector

Description

Select points on a scatterplot and get information about them

Usage

CellSelector(plot, object = NULL, ident = "SelectedCells", ...)

FeatureLocator(plot, ...)

Arguments

plot	A ggplot2 plot
object	An optional Seurat object; if passes, will return an object with the identities of selected cells set to ident
ident	An optional new identity class to assign the selected cells
...	Ignored

Value

If object is NULL, the names of the points selected; otherwise, a Seurat object with the selected cells identity classes set to ident

See Also

DimPlot FeaturePlot

Examples

## Not run: 
data("pbmc_small")
plot <- DimPlot(object = pbmc_small)
# Follow instructions in the terminal to select points
cells.located <- CellSelector(plot = plot)
cells.located
# Automatically set the identity class of selected cells and return a new Seurat object
pbmc_small <- CellSelector(plot = plot, object = pbmc_small, ident = 'SelectedCells')

## End(Not run)

satijalab/seurat documentation built on May 11, 2024, 4:04 a.m.