Files in sbalci/ClinicoPathJamoviModule
Analysis for Clinicopathological Research

.Rbuildignore

.Rprofile

.gitattributes

.github/.gitignore

.github/FUNDING.yml

.github/workflows/R-CMD-check.yaml

.github/workflows/check-release.yaml

.github/workflows/check-standard.yaml

.github/workflows/pkgdown.yaml

.gitignore

ClinicoPathJamoviModule.Rproj

ClinicoPathJamoviModule.code-workspace

DESCRIPTION

LICENSE.md

NAMESPACE

NEWS.md R/00jmv.R R/ClinicoPath-package.R R/ClinicoPathDescriptives-package.R R/agepyramid.b.R R/agepyramid.h.R R/agreement.b.R R/agreement.h.R R/alluvial.b.R R/alluvial.h.R R/alluvialsurvival.b.R R/alluvialsurvival.h.R R/benford.b.R R/benford.h.R R/checkdata.b.R R/checkdata.h.R R/chisq.multcomp.R R/cisingle.b.R R/cisingle.h.R R/classification.b.R R/classification.h.R R/comparingsurvival.b.R R/comparingsurvival.h.R R/competingsurvival.b.R R/competingsurvival.h.R R/consort.b.R R/consort.h.R R/conttables.b.R R/conttables.h.R R/conttablespaired.b.R R/conttablespaired.h.R R/correlation.b.R R/correlation.h.R R/crosstable.b.R R/crosstable.h.R R/data-histopathology.R R/data-treatmentResponse.R R/data.R R/decision.b.R R/decision.h.R R/decision2.b.R R/decision2.h.R R/decisioncalculator.b.R R/decisioncalculator.h.R R/dendogram.b.R R/dendogram.h.R R/flowchart.b.R R/flowchart.h.R R/for-utils.R R/for_jjstatsplot.R R/gtsummary.b.R R/gtsummary.h.R R/icccoeff.b.R R/icccoeff.h.R R/ihcstats.b.R R/ihcstats.h.R R/jjarcdiagram.b.R R/jjarcdiagram.h.R R/jjbarstats.b.R R/jjbarstats.h.R R/jjbetweenstats.b.R R/jjbetweenstats.h.R R/jjcorrmat.b.R R/jjcorrmat.h.R R/jjdotplotstats.b.R R/jjdotplotstats.h.R R/jjhelpers_messages.R R/jjhistostats.b.R R/jjhistostats.h.R R/jjpiestats.b.R R/jjpiestats.h.R R/jjridgestats.b.R R/jjridgestats.h.R R/jjscatterstats.b.R R/jjscatterstats.h.R R/jjstatsplot-data.R R/jjstatsplot-package.R R/jjstreamgraph.b.R R/jjstreamgraph.h.R R/jjtreemap.b.R R/jjtreemap.h.R R/jjwithinstats.b.R R/jjwithinstats.h.R R/jsurvival-data.R R/jsurvival-package.R R/jviolin.b.R R/jviolin.h.R R/kappasizeci.b.R R/kappasizeci.h.R R/kappasizefixedn.b.R R/kappasizefixedn.h.R R/kappasizepower.b.R R/kappasizepower.h.R R/lassocox.b.R R/lassocox.h.R R/linechart.b.R R/linechart.h.R R/lollipop.b.R R/lollipop.h.R R/meddecide-data.R R/meddecide-package.R R/meddecide-stats_utils.R R/meddecide-utils.R R/multisurvival.b.R R/multisurvival.h.R R/nogoldstandard.b.R R/nogoldstandard.h.R R/nomogram.b.R R/nomogram.h.R R/nomogrammer.r R/nomogrammer2.r R/oddsratio.b.R R/oddsratio.h.R R/onesurvival.b.R R/onesurvival.h.R R/pairchi2.b.R R/pairchi2.h.R R/parallelplot.b.R R/parallelplot.h.R R/posthoc_utils.R R/ppv.b.R R/ppv.h.R R/reportcat.b.R R/reportcat.h.R R/retracted.b.R R/retracted.h.R R/rmngb_pairwise.R R/roc.b.R R/roc.h.R R/singlearm.b.R R/singlearm.h.R R/stats_utils.R R/statsplot2.b.R R/statsplot2.h.R R/summarydata.b.R R/summarydata.h.R R/survival.b.R R/survival.h.R R/survivalcont.b.R R/survivalcont.h.R R/swimmerplot.b.R R/swimmerplot.h.R R/tableone.b.R R/tableone.h.R R/testroc.b.R R/testroc.h.R R/testroc_utilities.R R/tidyplots.b.R R/tidyplots.h.R R/timeinterval.b.R R/timeinterval.h.R R/timeroc.b.R R/timeroc.h.R R/toolssummary.b.R R/toolssummary.h.R R/tree.b.R R/tree.h.R R/tumor_response_examples.R R/utils-pipe.R R/utils-pipe2.R R/utils.R R/vartree.b.R R/vartree.h.R R/vartree2.b.R R/vartree2.h.R R/vartree3.b.R R/vartree3.h.R R/venn.b.R R/venn.h.R R/waffle.b.R R/waffle.h.R R/waterfall.b.R R/waterfall.h.R README.Rmd README.md

_pkgdown.yml

_updateModules.R

codecov.yml

codemeta.json

data/BreastCancer.csv

data/BreastCancer.omv

data/BreastCancer.rda

data/colon.csv

data/colon.omv

data/colon.rda

data/heartdisease.RDS

data/heartdisease.omv

data/heartdisease.xlsx

data/histopathology.csv

data/histopathology.omv

data/histopathology.rda

data/histopathologyDescriptives.omv

data/histopathologyGraphsPlots.omv

data/histopathologyMedicalDecision.omv

data/histopathologySurvival.omv

data/histopathology_jasp.jasp

data/ihc_test_data.csv

data/melanoma.csv

data/melanoma.omv

data/melanoma.rda

data/oncology_response_data.RData

data/oncology_response_data.csv

data/oncology_response_data.rds

data/percent_no_time.csv

data/percent_no_time.rda

data/percent_with_time.csv

data/percent_with_time.rda

data/pmid.omv

data/raw_no_time.csv

data/raw_no_time.rda

data/raw_with_time.csv

data/raw_with_time.rda

data/retractiondio2.omv

data/retractiondoi.omv

data/rocdata.csv

data/rocdata.omv

data/rocdata.rda

data/swimmer_data.csv

data/swimmer_data.rda

data/swimmer_data_date_formats.csv

data/swimmer_data_date_formats.omv

data/swimmer_data_date_formats.rda

data/swimmer_data_raw.csv

data/swimmer_data_raw.omv

data/swimmer_data_raw.rda

data/tumor_response_data.csv

data/tumor_response_examples.rda

datageneration/ihc-test-data.r datageneration/oncology_response_data.R datageneration/preparations-1.R datageneration/swimmer-plot-example-data.r

docs/404.html

docs/LICENSE.html

docs/articles/data-preperation.html

docs/articles/examples.html

docs/articles/images/jsurvival-course.jpg

docs/articles/index.html

docs/articles/module_development_jamovi.html

docs/articles/motivation.html

docs/articles/pathology_jamovi.html

docs/articles/pkgnet-report.html

docs/articles/use-ClinicoPathDescriptives-in-R.html

docs/articles/use-ClinicoPathDescriptives-in-R_files/figure-html/unnamed-chunk-3-1.png

docs/articles/use-ClinicoPathDescriptives-in-R_files/figure-html/unnamed-chunk-7-1.png

docs/articles/use-ClinicoPathDescriptives-in-R_files/figure-html/unnamed-chunk-9-1.png

docs/articles/use-jjstatsplot-in-R.html

docs/articles/use-jsurvival-in-R.html

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-10-1.png

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-11-1.png

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-12-1.png

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-18-1.png

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-3-1.png

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-3-2.png

docs/articles/use-jsurvival-in-R_files/figure-html/unnamed-chunk-3-3.png

docs/articles/use-meddecide-in-R.html

docs/articles/users-of-ClinicoPath.html

docs/authors.html

docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js

docs/deps/bootstrap-5.3.1/bootstrap.bundle.min.js.map

docs/deps/bootstrap-5.3.1/bootstrap.min.css

docs/deps/bootstrap-toc-1.0.1/bootstrap-toc.min.js

docs/deps/clipboard.js-2.0.11/clipboard.min.js

docs/deps/data-deps.txt

docs/deps/font-awesome-6.5.2/css/all.css

docs/deps/font-awesome-6.5.2/css/all.min.css

docs/deps/font-awesome-6.5.2/css/v4-shims.css

docs/deps/font-awesome-6.5.2/css/v4-shims.min.css

docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.ttf

docs/deps/font-awesome-6.5.2/webfonts/fa-brands-400.woff2

docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.ttf

docs/deps/font-awesome-6.5.2/webfonts/fa-regular-400.woff2

docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.ttf

docs/deps/font-awesome-6.5.2/webfonts/fa-solid-900.woff2

docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.ttf

docs/deps/font-awesome-6.5.2/webfonts/fa-v4compatibility.woff2

docs/deps/headroom-0.11.0/headroom.min.js

docs/deps/headroom-0.11.0/jQuery.headroom.min.js

docs/deps/jquery-3.6.0/jquery-3.6.0.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.js

docs/deps/jquery-3.6.0/jquery-3.6.0.min.map

docs/deps/search-1.0.0/autocomplete.jquery.min.js

docs/deps/search-1.0.0/fuse.min.js

docs/deps/search-1.0.0/mark.min.js

docs/index.html

docs/katex-auto.js

docs/lightswitch.js

docs/link.svg

docs/news/index.html

docs/pkgdown.js

docs/pkgdown.yml

docs/reference/ClinicoPath-package.html

docs/reference/ClinicoPath.html

docs/reference/TestROC.html

docs/reference/agepyramid.html

docs/reference/agepyramidClass.html

docs/reference/agreement.html

docs/reference/agreementClass.html

docs/reference/alluvial.html

docs/reference/alluvialClass.html

docs/reference/alluvialSurvival.html

docs/reference/auc_ci.html

docs/reference/benford.html

docs/reference/bootstrap_ci.html

docs/reference/checkdata.html

docs/reference/chisq.multcomp.html

docs/reference/ciSingle.html

docs/reference/classification.html

docs/reference/comparingSurvival.html

docs/reference/competingsurvival.html

docs/reference/competingsurvivalClass.html

docs/reference/consort.html

docs/reference/consortClass.html

docs/reference/contTables.html

docs/reference/contTablesPaired.html

docs/reference/correlation.html

docs/reference/correlationClass.html

docs/reference/crosstable.html

docs/reference/crosstableClass.html

docs/reference/decision.html

docs/reference/decision2.html

docs/reference/decisionClass.html

docs/reference/decisioncalculator.html

docs/reference/decisioncalculatorClass.html

docs/reference/dendogram.html

docs/reference/figures/flow_tableone.png

docs/reference/figures/jamovi-ClinicoPath-0.0.2-released.gif

docs/reference/figures/jamovi-ClinicoPath-BenfordAnalysis.gif

docs/reference/figures/jamovi-ClinicoPath-FaganNomogram.gif

docs/reference/figures/jamovi-ClinicoPath-VariableTree.gif

docs/reference/figures/jamovi-ClinicoPath-VariableTree2.gif

docs/reference/figures/jamovi-ClinicoPath-age-pyramid.png

docs/reference/figures/jamovi-ClinicoPath-easyalluvial.gif

docs/reference/figures/jamovi-ClinicoPath-example-datasets-2.gif

docs/reference/figures/jamovi-ClinicoPath-example-datasets.gif

docs/reference/figures/jamovi-ClinicoPath-ggstatsplot-alluvial-plots.gif

docs/reference/figures/jamovi-ClinicoPath-natural-language-data-summary.gif

docs/reference/figures/jamovi-ClinicoPath-oddsratio.gif

docs/reference/figures/jamovi-ClinicoPath-tableone.gif

docs/reference/figures/jamovi-KMunicate-survival.png

docs/reference/figures/jamovi-and-CrossTable-FinalFit.png

docs/reference/figures/jamovi-and-R-caret-from-data.png

docs/reference/figures/jamovi-and-R-caret-user-input.png

docs/reference/figures/jamovi-and-R-ggstatsplot.png

docs/reference/figures/jamovi-and-R-report.gif

docs/reference/figures/jamovi-and-R-tableone.gif

docs/reference/figures/jamovi-and-R-tangram.png

docs/reference/figures/jamovi-and-ggstatsplot.gif

docs/reference/figures/jamovi-and-multivariate-survival.gif

docs/reference/figures/jamovi-and-survival-analysis-finalfit-2.png

docs/reference/figures/jamovi-and-survival-analysis-finalfit-3.png

docs/reference/figures/jamovi-and-survival-analysis-finalfit.png

docs/reference/figures/jamovi-and-survival-analysis-multivariate-finalfit.png

docs/reference/figures/jamovi-and-tangram-crosstable.gif

docs/reference/figures/jamovi-clinicopath-FFTrees-decision-tree.png

docs/reference/figures/jamovi-clinicopath-explore-decision-tree.png

docs/reference/figures/jamovi-clinicopath-kappa-irr.png

docs/reference/figures/jamovi-clinicopath-multivariate-survival.gif

docs/reference/figures/jamovi-clinicopath-rpart-decision-tree.png

docs/reference/figures/jamovi-library.png

docs/reference/figures/jamovi-sideload.gif

docs/reference/figures/jamovi-sideload.png

docs/reference/figures/jamovi-write-summary-continuous-variables.gif

docs/reference/figures/pairwise-survival-summary.png

docs/reference/figures/survival-summary.png

docs/reference/flowchart.html

docs/reference/flowchartClass.html

docs/reference/gtsummary.html

docs/reference/gtsummaryClass.html

docs/reference/histopathology.html

docs/reference/icccoeff.html

docs/reference/icccoeffClass.html

docs/reference/ihcstats.html

docs/reference/ihcstatsClass.html

docs/reference/index.html

docs/reference/jjarcdiagram.html

docs/reference/jjarcdiagramClass.html

docs/reference/jjbarstats.html

docs/reference/jjbarstatsClass.html

docs/reference/jjbetweenstats.html

docs/reference/jjbetweenstatsClass.html

docs/reference/jjcorrmat.html

docs/reference/jjcorrmatClass.html

docs/reference/jjdotplotstats.html

docs/reference/jjdotplotstatsClass.html

docs/reference/jjhistostats.html

docs/reference/jjhistostatsClass.html

docs/reference/jjpiestats.html

docs/reference/jjpiestatsClass.html

docs/reference/jjridgestats.html

docs/reference/jjridgestatsClass.html

docs/reference/jjscatterstats.html

docs/reference/jjscatterstatsClass.html

docs/reference/jjstreamgraph.html

docs/reference/jjstreamgraphClass.html

docs/reference/jjtreemap.html

docs/reference/jjtreemapClass.html

docs/reference/jjwithinstats.html

docs/reference/jviolin.html

docs/reference/jviolinClass.html

docs/reference/kappaSizeCI.html

docs/reference/kappaSizeCIClass.html

docs/reference/kappaSizeFixedN.html

docs/reference/kappaSizeFixedNClass.html

docs/reference/kappaSizePower.html

docs/reference/kappaSizePowerClass.html

docs/reference/lassocox.html

docs/reference/lassocoxClass.html

docs/reference/linechart.html

docs/reference/lollipop.html

docs/reference/multisurvival.html

docs/reference/multisurvivalClass.html

docs/reference/nogoldstandard.html

docs/reference/nogoldstandardClass.html

docs/reference/nomogram.html

docs/reference/oddsratio.html

docs/reference/oddsratioClass.html

docs/reference/oneSurvival.html

docs/reference/pairchi2.html

docs/reference/pairchi2Class.html

docs/reference/parallelplot.html

docs/reference/pipe.html

docs/reference/ppv.html

docs/reference/print.DeLong.html

docs/reference/print.sensSpecTable.html

docs/reference/reportcat.html

docs/reference/reportcatClass.html

docs/reference/retracted.html

docs/reference/retractedClass.html

docs/reference/roc.html

docs/reference/rocClass.html

docs/reference/singlearm.html

docs/reference/singlearmClass.html

docs/reference/statsplot2.html

docs/reference/statsplot2Class.html

docs/reference/summarydata.html

docs/reference/summarydataClass.html

docs/reference/survival.html

docs/reference/survivalClass.html

docs/reference/survivalcont.html

docs/reference/survivalcontClass.html

docs/reference/swimmerplot.html

docs/reference/swimmerplotClass.html

docs/reference/tableone.html

docs/reference/tableoneClass.html

docs/reference/tidyplots.html

docs/reference/tidyplotsClass.html

docs/reference/timeinterval.html

docs/reference/timeintervalClass.html

docs/reference/timeroc.html

docs/reference/toolssummary.html

docs/reference/toolssummaryClass.html

docs/reference/tree.html

docs/reference/treeClass.html

docs/reference/tumor_response_examples.html

docs/reference/vartree.html

docs/reference/vartreeClass.html

docs/reference/venn.html

docs/reference/vennClass.html

docs/reference/waffle.html

docs/reference/waffleClass.html

docs/reference/waterfall.html

docs/reference/waterfallClass.html

docs/search.json

docs/sitemap.xml

inst/extdata/BreastCancer.csv

inst/extdata/BreastCancer.omv

inst/extdata/BreastCancer.rda

inst/extdata/colon.csv

inst/extdata/colon.omv

inst/extdata/colon.rda

inst/extdata/histopathology.csv

inst/extdata/histopathology.omv

inst/extdata/histopathology.rda

inst/extdata/histopathology.rds

inst/extdata/histopathology.xlsx

inst/extdata/histopathologyDescriptives.omv

inst/extdata/histopathologyGraphsPlots.omv

inst/extdata/histopathologyMedicalDecision.omv

inst/extdata/histopathologySurvival.omv

inst/extdata/histopathologyanalysis.omv

inst/extdata/melanoma.csv

inst/extdata/melanoma.omv

inst/extdata/melanoma.rda

inst/extdata/retractiondoi.omv

inst/extdata/rocdata.csv

inst/extdata/rocdata.omv

inst/extdata/rocdata.rda

jamovi/0000.yaml

jamovi/00refs.yaml

jamovi/agepyramid.a.yaml

jamovi/agepyramid.r.yaml

jamovi/agepyramid.u.yaml

jamovi/agreement.a.yaml

jamovi/agreement.r.yaml

jamovi/agreement.u.yaml

jamovi/alluvial.a.yaml

jamovi/alluvial.r.yaml

jamovi/alluvial.u.yaml

jamovi/alluvialsurvival.a.yaml

jamovi/alluvialsurvival.r.yaml

jamovi/alluvialsurvival.u.yaml

jamovi/benford.a.yaml

jamovi/benford.r.yaml

jamovi/benford.u.yaml

jamovi/checkdata.a.yaml

jamovi/checkdata.r.yaml

jamovi/checkdata.u.yaml

jamovi/cisingle.a.yaml

jamovi/cisingle.r.yaml

jamovi/cisingle.u.yaml

jamovi/classification.a.yaml

jamovi/classification.r.yaml

jamovi/classification.u.yaml

jamovi/comparingsurvival.a.yaml

jamovi/comparingsurvival.r.yaml

jamovi/comparingsurvival.u.yaml

jamovi/competingsurvival.a.yaml

jamovi/competingsurvival.r.yaml

jamovi/competingsurvival.u.yaml

jamovi/consort.a.yaml

jamovi/consort.r.yaml

jamovi/consort.u.yaml

jamovi/conttables.a.yaml

jamovi/conttables.r.yaml

jamovi/conttables.u.yaml

jamovi/conttablespaired.a.yaml

jamovi/conttablespaired.r.yaml

jamovi/conttablespaired.u.yaml

jamovi/correlation.a.yaml

jamovi/correlation.r.yaml

jamovi/correlation.u.yaml

jamovi/crosstable.a.yaml

jamovi/crosstable.r.yaml

jamovi/crosstable.u.yaml

jamovi/decision.a.yaml

jamovi/decision.r.yaml

jamovi/decision.u.yaml

jamovi/decision2.a.yaml

jamovi/decision2.r.yaml

jamovi/decision2.u.yaml

jamovi/decisioncalculator.a.yaml

jamovi/decisioncalculator.r.yaml

jamovi/decisioncalculator.u.yaml

jamovi/dendogram.a.yaml

jamovi/dendogram.r.yaml

jamovi/dendogram.u.yaml

jamovi/flowchart.a.yaml

jamovi/flowchart.r.yaml

jamovi/flowchart.u.yaml

jamovi/gtsummary.a.yaml

jamovi/gtsummary.r.yaml

jamovi/gtsummary.u.yaml

jamovi/icccoeff.a.yaml

jamovi/icccoeff.r.yaml

jamovi/icccoeff.u.yaml

jamovi/ihcstats.a.yaml

jamovi/ihcstats.r.yaml

jamovi/ihcstats.u.yaml

jamovi/jjarcdiagram.a.yaml

jamovi/jjarcdiagram.r.yaml

jamovi/jjarcdiagram.u.yaml

jamovi/jjbarstats.a.yaml

jamovi/jjbarstats.r.yaml

jamovi/jjbarstats.u.yaml

jamovi/jjbetweenstats.a.yaml

jamovi/jjbetweenstats.r.yaml

jamovi/jjbetweenstats.u.yaml

jamovi/jjcorrmat.a.yaml

jamovi/jjcorrmat.r.yaml

jamovi/jjcorrmat.u.yaml

jamovi/jjdotplotstats.a.yaml

jamovi/jjdotplotstats.r.yaml

jamovi/jjdotplotstats.u.yaml

jamovi/jjhistostats.a.yaml

jamovi/jjhistostats.r.yaml

jamovi/jjhistostats.u.yaml

jamovi/jjpiestats.a.yaml

jamovi/jjpiestats.r.yaml

jamovi/jjpiestats.u.yaml

jamovi/jjridgestats.a.yaml

jamovi/jjridgestats.r.yaml

jamovi/jjridgestats.u.yaml

jamovi/jjscatterstats.a.yaml

jamovi/jjscatterstats.r.yaml

jamovi/jjscatterstats.u.yaml

jamovi/jjstreamgraph.a.yaml

jamovi/jjstreamgraph.r.yaml

jamovi/jjstreamgraph.u.yaml

jamovi/jjtreemap.a.yaml

jamovi/jjtreemap.r.yaml

jamovi/jjtreemap.u.yaml

jamovi/jjwithinstats.a.yaml

jamovi/jjwithinstats.r.yaml

jamovi/jjwithinstats.u.yaml

jamovi/js/kappasizeci.js

jamovi/js/kappasizefixedn.js

jamovi/js/kappasizepower.js

jamovi/jviolin.a.yaml

jamovi/jviolin.r.yaml

jamovi/jviolin.u.yaml

jamovi/kappasizeci.a.yaml

jamovi/kappasizeci.r.yaml

jamovi/kappasizeci.u.yaml

jamovi/kappasizefixedn.a.yaml

jamovi/kappasizefixedn.r.yaml

jamovi/kappasizefixedn.u.yaml

jamovi/kappasizepower.a.yaml

jamovi/kappasizepower.r.yaml

jamovi/kappasizepower.u.yaml

jamovi/lassocox.a.yaml

jamovi/lassocox.r.yaml

jamovi/lassocox.u.yaml

jamovi/linechart.a.yaml

jamovi/linechart.r.yaml

jamovi/linechart.u.yaml

jamovi/lollipop.a.yaml

jamovi/lollipop.r.yaml

jamovi/lollipop.u.yaml

jamovi/multisurvival.a.yaml

jamovi/multisurvival.r.yaml

jamovi/multisurvival.u.yaml

jamovi/nogoldstandard.a.yaml

jamovi/nogoldstandard.r.yaml

jamovi/nogoldstandard.u.yaml

jamovi/nomogram.a.yaml

jamovi/nomogram.r.yaml

jamovi/nomogram.u.yaml

jamovi/oddsratio.a.yaml

jamovi/oddsratio.r.yaml

jamovi/oddsratio.u.yaml

jamovi/onesurvival.a.yaml

jamovi/onesurvival.r.yaml

jamovi/onesurvival.u.yaml

jamovi/pairchi2.a.yaml

jamovi/pairchi2.r.yaml

jamovi/pairchi2.u.yaml

jamovi/parallelplot.a.yaml

jamovi/parallelplot.r.yaml

jamovi/parallelplot.u.yaml

jamovi/ppv.a.yaml

jamovi/ppv.r.yaml

jamovi/ppv.u.yaml

jamovi/reportcat.a.yaml

jamovi/reportcat.r.yaml

jamovi/reportcat.u.yaml

jamovi/retracted.a.yaml

jamovi/retracted.r.yaml

jamovi/retracted.u.yaml

jamovi/roc.a.yaml

jamovi/roc.r.yaml

jamovi/roc.u.yaml

jamovi/singlearm.a.yaml

jamovi/singlearm.r.yaml

jamovi/singlearm.u.yaml

jamovi/statsplot2.a.yaml

jamovi/statsplot2.r.yaml

jamovi/statsplot2.u.yaml

jamovi/summarydata.a.yaml

jamovi/summarydata.r.yaml

jamovi/summarydata.u.yaml

jamovi/survival.a.yaml

jamovi/survival.r.yaml

jamovi/survival.u.yaml

jamovi/survivalcont.a.yaml

jamovi/survivalcont.r.yaml

jamovi/survivalcont.u.yaml

jamovi/swimmerplot.a.yaml

jamovi/swimmerplot.r.yaml

jamovi/swimmerplot.u.yaml

jamovi/tableone.a.yaml

jamovi/tableone.r.yaml

jamovi/tableone.u.yaml

jamovi/testroc.a.yaml

jamovi/testroc.r.yaml

jamovi/testroc.u.yaml

jamovi/tidyplots.a.yaml

jamovi/tidyplots.r.yaml

jamovi/tidyplots.u.yaml

jamovi/timeinterval.a.yaml

jamovi/timeinterval.r.yaml

jamovi/timeinterval.u.yaml

jamovi/timeroc.a.yaml

jamovi/timeroc.r.yaml

jamovi/timeroc.u.yaml

jamovi/toolssummary.a.yaml

jamovi/toolssummary.r.yaml

jamovi/toolssummary.u.yaml

jamovi/tree.a.yaml

jamovi/tree.r.yaml

jamovi/tree.u.yaml

jamovi/vartree.a.yaml

jamovi/vartree.r.yaml

jamovi/vartree.u.yaml

jamovi/vartree2.a.yaml

jamovi/vartree2.r.yaml

jamovi/vartree2.u.yaml

jamovi/vartree3.a.yaml

jamovi/vartree3.r.yaml

jamovi/vartree3.u.yaml

jamovi/venn.a.yaml

jamovi/venn.r.yaml

jamovi/venn.u.yaml

jamovi/waffle.a.yaml

jamovi/waffle.r.yaml

jamovi/waffle.u.yaml

jamovi/waterfall.a.yaml

jamovi/waterfall.r.yaml

jamovi/waterfall.u.yaml

man/ClinicoPath-package.Rd man/TestROC.Rd man/agepyramid.Rd man/agepyramidClass.Rd man/agreement.Rd man/agreementClass.Rd man/alluvial.Rd man/alluvialClass.Rd man/alluvialSurvival.Rd man/auc_ci.Rd man/benford.Rd man/bootstrap_ci.Rd man/checkdata.Rd man/chisq.multcomp.Rd man/ciSingle.Rd man/classification.Rd man/comparingSurvival.Rd man/competingsurvival.Rd man/competingsurvivalClass.Rd man/consort.Rd man/consortClass.Rd man/contTables.Rd man/contTablesPaired.Rd man/correlation.Rd man/correlationClass.Rd man/crosstable.Rd man/crosstableClass.Rd man/decision.Rd man/decision2.Rd man/decisionClass.Rd man/decisioncalculator.Rd man/decisioncalculatorClass.Rd man/dendogram.Rd

man/figures/flow_tableone.png

man/figures/jamovi-ClinicoPath-0.0.2-released.gif

man/figures/jamovi-ClinicoPath-BenfordAnalysis.gif

man/figures/jamovi-ClinicoPath-FaganNomogram.gif

man/figures/jamovi-ClinicoPath-VariableTree.gif

man/figures/jamovi-ClinicoPath-VariableTree2.gif

man/figures/jamovi-ClinicoPath-age-pyramid.png

man/figures/jamovi-ClinicoPath-easyalluvial.gif

man/figures/jamovi-ClinicoPath-example-datasets-2.gif

man/figures/jamovi-ClinicoPath-example-datasets.gif

man/figures/jamovi-ClinicoPath-ggstatsplot-alluvial-plots.gif

man/figures/jamovi-ClinicoPath-natural-language-data-summary.gif

man/figures/jamovi-ClinicoPath-oddsratio.gif

man/figures/jamovi-ClinicoPath-tableone.gif

man/figures/jamovi-KMunicate-survival.png

man/figures/jamovi-and-CrossTable-FinalFit.png

man/figures/jamovi-and-R-caret-from-data.png

man/figures/jamovi-and-R-caret-user-input.png

man/figures/jamovi-and-R-ggstatsplot.png

man/figures/jamovi-and-R-report.gif

man/figures/jamovi-and-R-tableone.gif

man/figures/jamovi-and-R-tangram.png

man/figures/jamovi-and-ggstatsplot.gif

man/figures/jamovi-and-multivariate-survival.gif

man/figures/jamovi-and-survival-analysis-finalfit-2.png

man/figures/jamovi-and-survival-analysis-finalfit-3.png

man/figures/jamovi-and-survival-analysis-finalfit.png

man/figures/jamovi-and-survival-analysis-multivariate-finalfit.png

man/figures/jamovi-and-tangram-crosstable.gif

man/figures/jamovi-clinicopath-FFTrees-decision-tree.png

man/figures/jamovi-clinicopath-explore-decision-tree.png

man/figures/jamovi-clinicopath-kappa-irr.png

man/figures/jamovi-clinicopath-multivariate-survival.gif

man/figures/jamovi-clinicopath-rpart-decision-tree.png

man/figures/jamovi-library.png

man/figures/jamovi-sideload.gif

man/figures/jamovi-sideload.png

man/figures/jamovi-write-summary-continuous-variables.gif

man/figures/pairwise-survival-summary.png

man/figures/survival-summary.png

man/flowchart.Rd man/flowchartClass.Rd man/gtsummary.Rd man/gtsummaryClass.Rd man/histopathology.Rd man/icccoeff.Rd man/icccoeffClass.Rd man/ihcstats.Rd man/ihcstatsClass.Rd man/jjarcdiagram.Rd man/jjarcdiagramClass.Rd man/jjbarstats.Rd man/jjbarstatsClass.Rd man/jjbetweenstats.Rd man/jjbetweenstatsClass.Rd man/jjcorrmat.Rd man/jjcorrmatClass.Rd man/jjdotplotstats.Rd man/jjdotplotstatsClass.Rd man/jjhistostats.Rd man/jjhistostatsClass.Rd man/jjpiestats.Rd man/jjpiestatsClass.Rd man/jjridgestats.Rd man/jjridgestatsClass.Rd man/jjscatterstats.Rd man/jjscatterstatsClass.Rd man/jjstreamgraph.Rd man/jjstreamgraphClass.Rd man/jjtreemap.Rd man/jjtreemapClass.Rd man/jjwithinstats.Rd man/jviolin.Rd man/jviolinClass.Rd man/kappaSizeCI.Rd man/kappaSizeCIClass.Rd man/kappaSizeFixedN.Rd man/kappaSizeFixedNClass.Rd man/kappaSizePower.Rd man/kappaSizePowerClass.Rd man/lassocox.Rd man/lassocoxClass.Rd man/linechart.Rd man/lollipop.Rd man/multisurvival.Rd man/multisurvivalClass.Rd man/nogoldstandard.Rd man/nogoldstandardClass.Rd man/nomogram.Rd man/oddsratio.Rd man/oddsratioClass.Rd man/oneSurvival.Rd man/pairchi2.Rd man/pairchi2Class.Rd man/parallelplot.Rd man/pipe.Rd man/ppv.Rd man/print.DeLong.Rd man/print.sensSpecTable.Rd man/reportcat.Rd man/reportcatClass.Rd man/retracted.Rd man/retractedClass.Rd man/roc.Rd man/rocClass.Rd man/singlearm.Rd man/singlearmClass.Rd man/statsplot2.Rd man/statsplot2Class.Rd man/summarydata.Rd man/summarydataClass.Rd man/survival.Rd man/survivalClass.Rd man/survivalcont.Rd man/survivalcontClass.Rd man/swimmerplot.Rd man/swimmerplotClass.Rd man/tableone.Rd man/tableoneClass.Rd man/tidyplots.Rd man/tidyplotsClass.Rd man/timeinterval.Rd man/timeintervalClass.Rd man/timeroc.Rd man/toolssummary.Rd man/toolssummaryClass.Rd man/tree.Rd man/treeClass.Rd man/tumor_response_examples.Rd man/vartree.Rd man/vartree2.Rd man/vartree2Class.Rd man/vartree3.Rd man/vartree3Class.Rd man/vartreeClass.Rd man/venn.Rd man/vennClass.Rd man/waffle.Rd man/waffleClass.Rd man/waterfall.Rd man/waterfallClass.Rd tests/testthat/test-decision.R tests/testthat/testthat.R

vignettes/.gitignore

vignettes/_wf_child.Rmd vignettes/_wf_master.Rmd vignettes/_workflows.Rmd vignettes/childRmd/_generatedCodeFlows.Rmd vignettes/data-preperation.Rmd vignettes/examples.Rmd

vignettes/figures/flow_agepyramid.png

vignettes/figures/flow_agreement.png

vignettes/figures/flow_alluvial.png

vignettes/figures/flow_crosstable.png

vignettes/figures/flow_decision.png

vignettes/figures/flow_decisioncalculator.png

vignettes/figures/flow_jjbarstats.png

vignettes/figures/flow_jjbetweenstats.png

vignettes/figures/flow_jjcorrmat.png

vignettes/figures/flow_jjdotplotstats.png

vignettes/figures/flow_jjhistostats.png

vignettes/figures/flow_jjpiestats.png

vignettes/figures/flow_jjscatterstats.png

vignettes/figures/flow_jjwithinstats.png

vignettes/figures/flow_multisurvival.png

vignettes/figures/flow_oddsratio.png

vignettes/figures/flow_reportcat.png

vignettes/figures/flow_statsplot2.png

vignettes/figures/flow_summarydata.png

vignettes/figures/flow_survival.png

vignettes/figures/flow_tableone.png

vignettes/graph.gv

vignettes/graph.mmd

vignettes/images/jsurvival-course.jpg

vignettes/module_development_jamovi.Rmd vignettes/motivation.Rmd vignettes/pathology_jamovi.Rmd vignettes/pkgnet-report.Rmd vignettes/use-ClinicoPathDescriptives-in-R.Rmd vignettes/use-jjstatsplot-in-R.Rmd vignettes/use-jsurvival-in-R.Rmd vignettes/use-meddecide-in-R.Rmd vignettes/users-of-ClinicoPath.Rmd

sbalci/ClinicoPathJamoviModule documentation built on Feb. 25, 2025, 6:34 a.m.

rdrr.io home R language documentation Run R code online

CRAN packages Bioconductor packages R-Forge packages GitHub packages

Note that we can't provide technical support on individual packages. You should contact the package authors for that.

sbalci/ClinicoPathJamoviModule
Analysis for Clinicopathological Research

Files in sbalci/ClinicoPathJamoviModule
Analysis for Clinicopathological Research

R Package Documentation

Browse R Packages

We want your feedback!

sbalci/ClinicoPathJamoviModule Analysis for Clinicopathological Research

Files in sbalci/ClinicoPathJamoviModule Analysis for Clinicopathological Research

R Package Documentation

Browse R Packages

We want your feedback!

sbalci/ClinicoPathJamoviModule
Analysis for Clinicopathological Research

Files in sbalci/ClinicoPathJamoviModule
Analysis for Clinicopathological Research