ihcstats: IHC Expression Analysis

In sbalci/ClinicoPathJamoviModule: Analysis for Clinicopathological Research

IHC Expression Analysis

Description

IHC Expression Analysis

Usage

ihcstats(
  data,
  markers,
  computeHScore = FALSE,
  clusterMethod = "hierarchical",
  distanceMetric = "gower",
  nClusters = 3,
  showDendrogram = FALSE,
  showHeatmap = FALSE,
  showScoreDist = FALSE
)

Arguments

data	The data as a data frame.
markers	IHC marker variables with categorical expression scores
computeHScore	.
clusterMethod	.
distanceMetric	.
nClusters	.
showDendrogram	.
showHeatmap	.
showScoreDist	.

Value

A results object containing:

results$todo					a html
results$hscoreTable					a table
results$clusterSummary					a table
results$clusterPlot					an image
results$heatmapPlot					an image
results$scoreDist					an image

Tables can be converted to data frames with asDF or as.data.frame. For example:

results$hscoreTable$asDF

as.data.frame(results$hscoreTable)

sbalci/ClinicoPathJamoviModule documentation built on Feb. 25, 2025, 6:34 a.m.