initSIR: Initial conditions for the SIR model
In sbfnk/dynmod: Dynamic models

Description Usage Arguments Details Value Author(s)

Takes a vector of initial conditions (in S, E(optionally), I, R) and returns a vector of initial conditions to use with S(E)IR models of arbitrary number of infectious stages and agegroups

1	initSIR(state, parameters, additional = c("Z"))

`state`	named state vector
`parameters`	parameters of the model
`additional`	additional classes

Multiple exposed or infectious stages might be introduced to change the distribution of waiting times, or because there are biologically distinct stages. Multiple age groups might be introduced to follow infection across age groups.

The number of age groups is determined by the number of S classes in the state vector

a named vector of initial conditions

Sebastian Funk

sbfnk/dynmod documentation built on May 29, 2019, 3:21 p.m.