Man pages for scfurl/seqGlue
Makes sequencing data come together like glue
| calc_dispersion | Calculate gene dispersion of a matrix |
| center.and.scale.by.column | Center and scale by row |
| center.and.scale.by.row | Center and scale by row |
| cluster | Cluster cells using Louvain/Leiden community detection |
| convert_to_long | Converts to long data format |
| dataExport | Export data to Excel file |
| enrichmentPlot | GSEA and plot |
| extract_summary | Perform PCA analysis |
| pca_plot | PCA plot |
| plotGene | Plot genes from a matrix, DESeq2 object or limma object |
| plot_gene_dispersion | Plot dispersion |
| plotGeneViolin | Plot genes from a DESeq2 object using a violin plot |
| profile_extract | Generate profile plots with ease |
| profile_plot | Profile Plot |
| remove_duplicated_rows | Removes data (collapses) with duplicated names |
| select_genes | Select features based on mean expression and variance |
| seqGlue-package | Makes sequencing data come together like glue |
| track_extract | Extract bigWig track data for the given loci |
| track_plot | Generate IGV style locus tracks with ease |
| writeGSEAfiles | Write GSEA files |
