plotGene: Plot genes from a matrix, DESeq2 object or limma object

In scfurl/seqGlue: Makes sequencing data come together like glue

Plot genes from a matrix, DESeq2 object or limma object

Description

Plot genes from a matrix, DESeq2 object or limma object

Usage

plotGene(obj, ...)

Arguments

obj	input object
gene	gene input
intgroup	factor to be used for grouping,
normalized	normalize data (default is TRUE)
transform	transform data (default is FALSE)
main	title
xlab	label for x axis of plot
returnData	return data instead of plot
replaced	= FALSE
theme_opts	use theme_opts (default is T)
annotate_data	default F
gene_short_name	column containin gene symbol; default = "gene_short_name"
ENSID	column containing gene id (ENSEMBL) default = "GENEID"
pc	pseudocount
annotation_col	the column of meta data to use for annotation (default ="sample")
point_size	default 3
colors	colors to use

scfurl/seqGlue documentation built on Sept. 1, 2024, 11:20 a.m.