calc_dispersion: Calculate gene dispersion of a matrix
In scfurl/seqGlue: Makes sequencing data come together like glue
calc_dispersion R Documentation
Calculate gene dispersion of a matrix
Description
Many genes typically co-vary with one another, and so the dimensionality of the
data can be reduced with a wide variety of different algorithms. After calculating dispersion for
a using the calc_dispersion function, the
select_genes function allows the user to identify a set of genes
that will be used in downstream dimensionality reduction methods.
Usage
calc_dispersion(
obj,
min_cells_detected = 1,
min_exprs = 1,
id_tag = "id",
removeOutliers = TRUE
)
Value
a list containing 1) a table of dispersion values and 2) the function to fit
References
Dispersion fitting taken from monocle2
scfurl/seqGlue documentation built on Sept. 1, 2024, 11:20 a.m.
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| calc_dispersion | R Documentation |
Calculate gene dispersion of a matrix
Description
Many genes typically co-vary with one another, and so the dimensionality of the
data can be reduced with a wide variety of different algorithms. After calculating dispersion for
a using the calc_dispersion function, the
select_genes function allows the user to identify a set of genes
that will be used in downstream dimensionality reduction methods.
Usage
calc_dispersion(
obj,
min_cells_detected = 1,
min_exprs = 1,
id_tag = "id",
removeOutliers = TRUE
)
Value
a list containing 1) a table of dispersion values and 2) the function to fit
References
Dispersion fitting taken from monocle2
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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