dataExport: Export data to Excel file

In scfurl/seqGlue: Makes sequencing data come together like glue

Export data to Excel file

Description

This function takes data in various forms (DESeq, ExpressionSet and exports them to an Excel File)

Usage

dataExport(
  object,
  filename,
  data_type = c("normalized_counts", "raw_counts", "vst_transformed"),
  unique_id_column = "id",
  symbol_name = "gene_short_name"
)

Arguments

object	the object from which function will extract data. Currently supported objects include: 1) DESeq2 object and 2) Bioconductor expression set.
filename	filename of Excel file
data_type	can be one of normalized, raw, transformed.

References

Love, M.I., Huber, W., Anders, S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 Genome Biology 15(12):550 (2014)

Orchestrating high-throughput genomic analysis with Bioconductor. W. Huber, V.J. Carey, R. Gentleman, ..., M. Morgan Nature Methods, 2015:12, 115.

scfurl/seqGlue documentation built on Sept. 1, 2024, 11:20 a.m.