get_kinomescan: Retrieve KINOMEscan assay data, percent control or kd.

In schurerlab/LINCSanalytics:

Description

Retrieve KINOMEscan assay data, percent control or kd.

Usage

get_kinomescan(level = "perc_ctrl", filter_perc_or_kd = "none",
  proteins = "all", perturbagens = "all", perturbagen_dose = "all")

Arguments

level	string equal to "perc_ctrl" or "kd" for percent control or kd data respectively (default "perc_ctrl")
filter_perc_or_kd	string expressing a threshold for specific percent inhibition or kd retrieval (default "none")
proteins	vector of strings with protein names (Default "all")
perturbagens	vector of strings with perturbagens IDs (Default "all")
perturbagen_dose	numeric vector with perturbagen doses (Default "all")

Value

data frame containing entity selected and the associated percent control or kd data

Examples

get_kinomescan(level="perc_ctrl")
get_kinomescan(level="kd",proteins="BRAF")
get_kinomescan(perturbagens = "10083-101-1",filter_perc_or_kd="<10")

schurerlab/LINCSanalytics documentation built on May 31, 2019, 2:56 p.m.