get_mema: Retrieve MEMA assay data, for different staining sets.

Description Usage Arguments Value Examples

Description

Retrieve MEMA assay data, for different staining sets.

Usage

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get_mema(ligands = "all", ecmps = "all", cells = "all",
  staining_set = 1, limits = 100)

Arguments

ligands

vector of strings with ligand names (Default "all")

ecmps

vector of strings with extracellular matrix proteins (Default "all")

cells

vector of strings with cell names (Default "all")

staining_set

integer for the different staining sets (1 to 4 for staining set 1, 2, 3 or 2noH3 respectively)

Value

data frame containing combination of perturbations and a set of measured features

Examples

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get_mema(staining_set=2)
get_mema(cells="PC3")
get_mema(staining_set=3, ligands="BMP3_P12645")

schurerlab/LINCSanalytics documentation built on May 31, 2019, 2:56 p.m.