Files in schuyler-smith/simple.dada
Runs a simplified DADA2 routine
.Rbuildignore
.Rhistory
.Rprofile
.Rproj.user/309DF443/console06/INDEX001
.Rproj.user/309DF443/cpp-definition-cache
.Rproj.user/309DF443/pcs/debug-breakpoints.pper
.Rproj.user/309DF443/pcs/files-pane.pper
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.Rproj.user/309DF443/persistent-state
.Rproj.user/309DF443/rmd-outputs
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.Rproj.user/309DF443/sources/prop/INDEX
.Rproj.user/707104DE/console06/INDEX001
.Rproj.user/707104DE/pcs/debug-breakpoints.pper
.Rproj.user/707104DE/pcs/files-pane.pper
.Rproj.user/707104DE/pcs/source-pane.pper
.Rproj.user/707104DE/pcs/windowlayoutstate.pper
.Rproj.user/707104DE/pcs/workbench-pane.pper
.Rproj.user/707104DE/persistent-state
.Rproj.user/707104DE/rmd-outputs
.Rproj.user/707104DE/saved_source_markers
.Rproj.user/707104DE/sources/prop/139554DD
.Rproj.user/707104DE/sources/prop/2D0BEBD3
.Rproj.user/707104DE/sources/prop/577CFDD3
.Rproj.user/707104DE/sources/prop/F5028387
.Rproj.user/707104DE/sources/prop/INDEX
.Rproj.user/shared/notebooks/patch-chunk-names
.Rproj.user/shared/notebooks/paths
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/read_quality_report.R
R/simple_dada.R
README.md
inst/extdata/raw_reads/F3D0_S188_L001_R1_001.fastq
inst/extdata/raw_reads/F3D0_S188_L001_R2_001.fastq
inst/extdata/raw_reads/F3D141_S207_L001_R1_001.fastq
inst/extdata/raw_reads/F3D141_S207_L001_R2_001.fastq
inst/extdata/raw_reads/F3D142_S208_L001_R1_001.fastq
inst/extdata/raw_reads/F3D142_S208_L001_R2_001.fastq
inst/extdata/raw_reads/F3D143_S209_L001_R1_001.fastq
inst/extdata/raw_reads/F3D143_S209_L001_R2_001.fastq
inst/extdata/raw_reads/F3D144_S210_L001_R1_001.fastq
inst/extdata/raw_reads/F3D144_S210_L001_R2_001.fastq
inst/extdata/raw_reads/F3D145_S211_L001_R1_001.fastq
inst/extdata/raw_reads/F3D145_S211_L001_R2_001.fastq
inst/extdata/raw_reads/F3D146_S212_L001_R1_001.fastq
inst/extdata/raw_reads/F3D146_S212_L001_R2_001.fastq
inst/extdata/raw_reads/F3D147_S213_L001_R1_001.fastq
inst/extdata/raw_reads/F3D147_S213_L001_R2_001.fastq
inst/extdata/raw_reads/F3D148_S214_L001_R1_001.fastq
inst/extdata/raw_reads/F3D148_S214_L001_R2_001.fastq
inst/extdata/raw_reads/F3D149_S215_L001_R1_001.fastq
inst/extdata/raw_reads/F3D149_S215_L001_R2_001.fastq
inst/extdata/raw_reads/F3D150_S216_L001_R1_001.fastq
inst/extdata/raw_reads/F3D150_S216_L001_R2_001.fastq
inst/extdata/raw_reads/F3D1_S189_L001_R1_001.fastq
inst/extdata/raw_reads/F3D1_S189_L001_R2_001.fastq
inst/extdata/raw_reads/F3D2_S190_L001_R1_001.fastq
inst/extdata/raw_reads/F3D2_S190_L001_R2_001.fastq
inst/extdata/raw_reads/F3D3_S191_L001_R1_001.fastq
inst/extdata/raw_reads/F3D3_S191_L001_R2_001.fastq
inst/extdata/raw_reads/F3D5_S193_L001_R1_001.fastq
inst/extdata/raw_reads/F3D5_S193_L001_R2_001.fastq
inst/extdata/raw_reads/F3D6_S194_L001_R1_001.fastq
inst/extdata/raw_reads/F3D6_S194_L001_R2_001.fastq
inst/extdata/raw_reads/F3D7_S195_L001_R1_001.fastq
inst/extdata/raw_reads/F3D7_S195_L001_R2_001.fastq
inst/extdata/raw_reads/F3D8_S196_L001_R1_001.fastq
inst/extdata/raw_reads/F3D8_S196_L001_R2_001.fastq
inst/extdata/raw_reads/F3D9_S197_L001_R1_001.fastq
inst/extdata/raw_reads/F3D9_S197_L001_R2_001.fastq
inst/extdata/raw_reads/HMP_MOCK.v35.fasta
inst/extdata/raw_reads/Mock_S280_L001_R1_001.fastq
inst/extdata/raw_reads/Mock_S280_L001_R2_001.fastq
inst/extdata/raw_reads/mouse.dpw.metadata
inst/extdata/raw_reads/mouse.time.design
inst/extdata/raw_reads/stability.batch
inst/extdata/raw_reads/stability.files
inst/extdata/silva_nr_v132_train_set.fa.gz
man/read_quality_report.Rd
man/simple_dada.Rd
simple_dada.Rproj
