CompToxCSVtoLocalCSVterms: Prepare CompTox Dashboard MetFrag Export CSV files for...
In schymane/ReSOLUTION: SOLUTIONS for High ReSOLUTION Mass Spectrometry
Description
Usage
Arguments
Value
Author(s)
See Also
Examples
View source: R/MetFragConfigR.R
Description
This function prepares CompTox CSV Export files for use in MetFragCL. It
extracts numeric metadata field names for inclusion as scoring terms.
Usage
1
CompToxCSVtoLocalCSVterms(csv_file, start_index=15)
Arguments
csv_file
Full path and file name to the Dashboard Export file to process
start_index
The column number where the metadata columns start (default 15 is appropriate
for CompTox Dashboard MetFragBeta Export file format released March 2018)
Value
Returns a list containing the CSV file name, a list of scoring terms to add to
the MetFrag config file and a corresponding score weights entry.
Author(s)
Emma Schymanski <emma.schymanski@uni.lu> in partnership with Christoph Ruttkies (MetFragCL),
Antony J. Williams and team (CompTox Dashboard)
See Also
Examples
1
2
CompToxCSV <- system.file("extdata","CompToxBatchSearch_MetFrag_MSready_C10H14N2_wSelectMetaData.csv",package="ReSOLUTION")
LocalCSVterms <- CompToxCSVtoLocalCSVterms(CompToxCSV)
schymane/ReSOLUTION documentation built on May 22, 2021, 3:41 a.m.
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Description Usage Arguments Value Author(s) See Also Examples
View source: R/MetFragConfigR.R
Description
This function prepares CompTox CSV Export files for use in MetFragCL. It extracts numeric metadata field names for inclusion as scoring terms.
Usage
1 | CompToxCSVtoLocalCSVterms(csv_file, start_index=15)
|
Arguments
csv_file |
Full path and file name to the Dashboard Export file to process |
start_index |
The column number where the metadata columns start (default |
Value
Returns a list containing the CSV file name, a list of scoring terms to add to the MetFrag config file and a corresponding score weights entry.
Author(s)
Emma Schymanski <emma.schymanski@uni.lu> in partnership with Christoph Ruttkies (MetFragCL), Antony J. Williams and team (CompTox Dashboard)
See Also
Examples
1 2 | CompToxCSV <- system.file("extdata","CompToxBatchSearch_MetFrag_MSready_C10H14N2_wSelectMetaData.csv",package="ReSOLUTION")
LocalCSVterms <- CompToxCSVtoLocalCSVterms(CompToxCSV)
|
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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