RMB_EIC_prescreen: EIC Prescreening function for RMassBank
In schymane/ReSOLUTION: SOLUTIONS for High ReSOLUTION Mass Spectrometry

Description Usage Arguments Value Author(s) Examples

This is a wrapper function to perform prescreening of EICs and MS/MS scans prior to running RMassBank, so entries can be checked visually. Output is a PDF and summary CSV; this is designed to check the data and not look pretty. This is mainly an internal function made public just in case it helps anyone. It is recommended to run this immediately prior to msmsWorkflow in RMassBank once all the appropriate files are set up.

RMB_EIC_prescreen(
  archive_name,
  RMB_mode,
  FileList,
  cmpd_list,
  ppm_limit_fine = 10,
  EIC_limit = 0.001
)

`archive_name`	Name of the archive (compatible with RMassBank naming)
`RMB_mode`	Mode in RMassBank
`FileList`	The FileList to be used in RMassBank
`cmpd_list`	The CompoundList to be used in RMassBank
`ppm_limit_fine`	The fine limit for extracting the MS/MS for `findMsMsHR.mass` in RMassBank (ppm)
`EIC_limit`	The (absolute) limit for EIC extraction.