README.md

deqc

normalize count matrix

count2tpm(count, geneLength, pseudoCount=0, log=F, pseudoTPM=1)
count2fpkm(count, geneLength, pseudoCount=0, log=F, pseudoFPKM=1)

plot PCA

plot PCA using normalized count and sample annotation

plot_pca(tpm, col_anno, color_col, shape_col=NULL, text_col=NULL, point_size=5, plot_file="")


sckinta/deqc documentation built on Jan. 11, 2022, 12:36 a.m.