count2fpkm: normalize count to FPKM
In sckinta/deqc: What the Package Does (One Line, Title Case)
Description
Usage
Arguments
Value
Description
normalize count to FPKM
Usage
1
count2fpkm(count, geneLength, pseudoCount = 0, log = F, pseudoFPKM = 1)
Arguments
count
a matrix or data.frame with unique id as row names and unique sample name as colnames required
geneLength
a named vector with unique id (required)
pseudoCount
the integer pseudoCount added to count matrix/data.frame. default = 0
log
a boolean value to determine whether the output fpkm is Logarithm. default = FALSE. If is TRUE, use pseudoFPKM.
pseudoFPKM
a integer pseudoCount added to FPKM matrix/data.frame after normalization for Logarithm. default = 1
Value
a data.frame of normalized count as FPKM
sckinta/deqc documentation built on Jan. 11, 2022, 12:36 a.m.
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Description Usage Arguments Value
Description
normalize count to FPKM
Usage
1 | count2fpkm(count, geneLength, pseudoCount = 0, log = F, pseudoFPKM = 1)
|
Arguments
count |
a matrix or data.frame with unique id as row names and unique sample name as colnames required |
geneLength |
a named vector with unique id (required) |
pseudoCount |
the integer pseudoCount added to count matrix/data.frame. default = 0 |
log |
a boolean value to determine whether the output fpkm is Logarithm. default = FALSE. If is TRUE, use pseudoFPKM. |
pseudoFPKM |
a integer pseudoCount added to FPKM matrix/data.frame after normalization for Logarithm. default = 1 |
Value
a data.frame of normalized count as FPKM
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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