count2tpm: normalize count to TPM

In sckinta/deqc: What the Package Does (One Line, Title Case)

Description

normalize count to TPM

Usage

count2tpm(count, geneLength, pseudoCount = 0, log = F, pseudoTPM = 1)

Arguments

count	a matrix or data.frame with unique id as row names and unique sample name as colnames required
geneLength	a named vector with unique id (required)
pseudoCount	the integer pseudoCount added to count matrix/data.frame. default = 0
log	a boolean value to determine whether the output tpm is Logarithm. default = FALSE. If is TRUE, use pseudoTPM.
pseudoTPM	a integer pseudoCount added to TPM matrix/data.frame after normalization for Logarithm. default = 1

Value

a data.frame of normalized count as TPM

sckinta/deqc documentation built on Jan. 11, 2022, 12:36 a.m.