target_purity: Load Purity and Ploidy estimates

In seandavi/TargetOsteoAnalysis: Access Open-access TARGET Osteosarcoma Data

Description

Results from PureCN run on discovery and validation sets.

Usage

target_purity()

Value

A data.frame with columns Source, Purity, Ploidy, and dataset

Examples

pure = target_purity()
head(pure)
library(magrittr)
library(dplyr)
pure %>%
  group_by(dataset) %>%
  summarise(medploidy = median(Ploidy, na.rm=TRUE),
            medpurity = median(Purity, na.rm=TRUE),
            lowpurity = quantile(Purity, 0.1, na.rm=TRUE))
library(ggplot2)
p = ggplot(pure, aes(x=Purity)) +
  geom_density(aes(group=dataset, color=dataset)) +
  ggtitle('Tumor Purity Estimates')
print(p)

seandavi/TargetOsteoAnalysis documentation built on May 22, 2020, 8:23 p.m.