structuralVariantVCFToGRanges: Convert structural variant VCF to GRanges
In seandavi/VCFWrenchR: VCF file utilities
Description
This function is just an opinionated approach to convert a VCF file
that encodes SVs into a GRanges object. The rationale for this
function is to be identify locations in the genome that disrupt
genes (or other regions of interest). An overlap of the returned
regions from this function with genes will result in a list of
putatively disrupted genes.
Usage
1
structuralVariantVCFToGRanges(vcf, max_deletion_size = Inf)
Arguments
vcf
VCF object encoding
variants in VCF format (see
seandavi/VCFWrenchR documentation built on May 29, 2019, 4:53 p.m.
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Description
This function is just an opinionated approach to convert a VCF file that encodes SVs into a GRanges object. The rationale for this function is to be identify locations in the genome that disrupt genes (or other regions of interest). An overlap of the returned regions from this function with genes will result in a list of putatively disrupted genes.
Usage
1 | structuralVariantVCFToGRanges(vcf, max_deletion_size = Inf)
|
Arguments
vcf |
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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