structuralVariantVCFToGRanges: Convert structural variant VCF to GRanges

Description Usage Arguments

View source: R/SV.R

Description

This function is just an opinionated approach to convert a VCF file that encodes SVs into a GRanges object. The rationale for this function is to be identify locations in the genome that disrupt genes (or other regions of interest). An overlap of the returned regions from this function with genes will result in a list of putatively disrupted genes.

Usage

1
structuralVariantVCFToGRanges(vcf, max_deletion_size = Inf)

Arguments

vcf

VCF object encoding variants in VCF format (see


seandavi/VCFWrenchR documentation built on Feb. 19, 2018, 2:06 a.m.