as.data.frame-ExpandedVCF-method: Convert ExpandedVCF to data.frame
In seandavi/VCFWrenchR: VCF file utilities
Description
This method converts an ExpandedVCF to a data.frame.
Usage
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## S4 method for signature 'ExpandedVCF'
as.data.frame(x, row.names = NULL, optional = FALSE,
...)
Examples
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require(VariantAnnotation)
vcffile = system.file(package='VariantAnnotation',path='extdata/chr22.vcf.gz')
v = readVcf(vcffile,'hg19')
ve = expand(v)
class(ve)
head(as.data.frame(v))
seandavi/VCFWrenchR documentation built on May 29, 2019, 4:53 p.m.
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Description
This method converts an ExpandedVCF to a data.frame.
Usage
1 2 3 | ## S4 method for signature 'ExpandedVCF'
as.data.frame(x, row.names = NULL, optional = FALSE,
...)
|
Examples
1 2 3 4 5 6 | require(VariantAnnotation)
vcffile = system.file(package='VariantAnnotation',path='extdata/chr22.vcf.gz')
v = readVcf(vcffile,'hg19')
ve = expand(v)
class(ve)
head(as.data.frame(v))
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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