Files in seandavi/methylumi
Handle Illumina methylation data
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
NAMESPACE
R/AllGenerics.R
R/Methods.R
R/MethyLumiM-class.R
R/MethyLumiSet-class.R
R/MoreGenerics.R
R/bgcorr.R
R/coercions.R
R/detectionpval.R
R/featureFilter.R
R/mclapply_replace.R
R/methylData-class.R
R/methylumIDAT.R
R/methylumiCSV.R
R/methylumiR.R
R/normalization.R
R/plotNegOob.R
R/qc.probe.plot.R
R/readIDAT2.R
R/stripMethyLumiSet.R
R/utilities.R
R/varFilter.R
README
README.md
data/CpGs.rda
data/mldat.rda
inst/NEWS.methylumIDAT
inst/extdata/5318317007_A_Grn.idat
inst/extdata/5318317007_A_Red.idat
inst/extdata/5318317007_B_Grn.idat
inst/extdata/5318317007_B_Red.idat
inst/extdata/5318317007_C_Grn.idat
inst/extdata/5318317007_C_Red.idat
inst/extdata/exampledata.controls.txt
inst/extdata/exampledata.samples.txt
inst/extdata/samples.txt
inst/extdata/substitutions.txt
man/CpGs.Rd
man/IDATsToMatrices.Rd
man/IDATtoMatrix.Rd
man/MethyLumi-class.Rd
man/MethyLumiM-class.Rd
man/MethyLumiQC-class.Rd
man/MethyLumiSet-class.Rd
man/estimateM.Rd
man/extractBarcodeAndPosition.Rd
man/featureFilter.Rd
man/generics.Rd
man/getAssayDataNameSubstitutions.Rd
man/methylData-class.Rd
man/methylumIDAT.Rd
man/methylumi-package.Rd
man/methylumiGenerics.Rd
man/methylumiR.Rd
man/mldat.Rd
man/normalizeMethyLumiSet.Rd
man/plotSampleIntensities.Rd
man/qcplot.Rd
man/stripBeadExtras.Rd
man/tcgaPipeline.Rd
man/varFilter.Rd
vignettes/.gitignore
vignettes/methylumi.Rnw
vignettes/methylumi450k.Rnw
