Description Usage Arguments Value
Genotype each cell for each region and plot the genotypes.
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Obj_filtered |
An Alleloscope object with a n cell by (m region * 4) genotype_values matrix. Every 2 columns in the genotype_table matrix are (rho_hat, theta_hat) of each region. |
xmax |
An integer for the x-axis maximum limit. |
plot_path |
The path for saving the plot. |
rds_path |
The path for saving the rds object. |
ref_gt |
A reference "genotypes" (from scDNA-seq) to help with genotype estimation. |
cell_type |
A matrix with two columns: COL1- cell barcodes; COL2- cell types ("tumor" and others) |
maxcp |
Integer. Setting the maximum number of copies for the analysis. |
legend |
Logical (TRUE/FALSE) Whether or not to show the figure legends. |
A list of ggplot objects of the genotyping results for all the regions.
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