genotype_conf: Compute confidence scores based on posterior probability for...
In seasoncloud/Alleloscope: Allele-specific copy number genotyping for single cell sequencing data
View source: R/genotype_conf.R
genotype_conf R Documentation
Compute confidence scores based on posterior probability for each cell in a region.
Description
Compute confidence scores based on posterior probability for each cell in a region.
Usage
genotype_conf(X = NULL, gt = NULL)
Arguments
X:
A ncell by 2 dataframe. Column 1: normalized coverage (rho_hat); Column 2: theta_hat
gt:
A vector of lenth ncell. The numbers represent cell-level allele-specific copy number states.
Value
A lineage tree plot constructed using cell-level haplotype profiles across all regions.
seasoncloud/Alleloscope documentation built on March 17, 2023, 1:14 a.m.
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View source: R/genotype_conf.R
| genotype_conf | R Documentation |
Compute confidence scores based on posterior probability for each cell in a region.
Description
Compute confidence scores based on posterior probability for each cell in a region.
Usage
genotype_conf(X = NULL, gt = NULL)
Arguments
X: |
A ncell by 2 dataframe. Column 1: normalized coverage (rho_hat); Column 2: theta_hat |
gt: |
A vector of lenth ncell. The numbers represent cell-level allele-specific copy number states. |
Value
A lineage tree plot constructed using cell-level haplotype profiles across all regions.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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