DE.status | R Documentation |
Defines the differential expression status of genes from RNA-seq data depending on fold change expression and adjusted p-value.
DE.status(
log2FC,
p.value.adjusted,
FC_threshold = 1.5,
FC_NoResp_left = 0.9,
FC_NoResp_rigth = NULL,
p.value_threshold = 0.05,
low.FC.status.label = "DOWN",
high.FC.status.label = "UP",
unresponsive.label = "NoResp",
null.label = "NULL"
)
log2FC |
Numeric vector of log2(fold change expression) values. |
p.value.adjusted |
Numeric vector of p-values. Use of adjusted p-values is recommended. |
FC_threshold |
Value of the threshold to use for the fold change expression to define differentially expressed genes, expressed as linear value. By default 1.5 and by consequence 1/1.5. |
FC_NoResp_left |
Value of the threshold to use for the fold change expression to define unresponsive genes when |
FC_NoResp_rigth |
Value of the threshold to use for the fold change expression to define unresponsive genes when |
p.value_threshold |
Value of the threshold to use for the p-values to define differentially expressed genes, expressed as linear value. By default 0.05. |
low.FC.status.label |
String to define the label indicating the differentially expressed genes with a |
high.FC.status.label |
String to define the label indicating the differentially expressed genes with a |
unresponsive.label |
String to define the label indicating the unresponsive genes identified as |
null.label |
String to define the label indicating the null genes. |
It returns a vector containing the differential expression status for each original value in the same order used in the input.
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