convert_sequence: Nucleic acid sequences converter.

In sebastian-gregoricchio/Rseb: An R-package for NGS data managing and visualization

Nucleic acid sequences converter.

Description

Obtains de complementary, reverse complementary or the reverse of a DNA/RNA sequence.

Usage

convert_sequence(sequence = NULL, mode = "not specified", nucleic.acid = "DNA")

Arguments

sequence	A string containing the sequence to be converted. By default NULL, it returns an help for the mode.
mode	A string value to define the modality of convertion. Possible options: - Reverse complement = revComp | RC | rc | reverseComplement - Reverse = rev | R | r | reverse - Complement = comp | C | c | complement. By default "not specified", it returns an help for the mode.
nucleic.acid	A string to define the type of nucleic acid to which the input sequence belongs. Available options "DNA", default value, or "RNA".

Value

It returns a string with the converted sequence.

Examples

convert_sequence(sequence = "AATTTCCCGTCGAT",
                 mode = "reverse",
                 nucleic.acid = "DNA")

sebastian-gregoricchio/Rseb documentation built on May 15, 2024, 5:45 a.m.