View source: R/GSEA.to.GOnumber.R
GSEA.to.GOnumber | R Documentation |
Helps to convert the terms of GSEA analyses into Gene Ontology (GO) ID numbers.
GSEA.to.GOnumber(
input_terms,
input_pvalue,
return_table = T,
export_table = F,
output_file_name = paste(getwd(), "GO_numbers_table.tsv", sep = "/")
)
input_terms |
A character vector containing the GSEA terms to be converted. |
input_pvalue |
A numeric vector containing the p-values of the GSEA terms. |
return_table |
Logic value to define whether to return the resulting data.frame. By default |
export_table |
Logic value to define whether to export the resulting data.frame. By default |
output_file_name |
Path and file name of the output table if export is required. By default |
This functions requires the package GO.db
.
If problems are encountered during the installation see https://www.biostars.org/p/50564/.
If required, returns a data.frame with 3 columns: GO_number, GO_annotation, p.value. This table could be directly exported.
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