inst/cli/download_best_assembly.R

In selkamand/utilitybeltrefseq: What the Package Does (One Line, Title Case)

#!/usr/bin/env Rscript

library(docopt)
library(utilitybeltrefseq)
'Download Best Assembly

Usage:
  download_best_assembly.R <taxid_of_interest>
  download_best_assembly.R -h | --help

Example:
  # Download Mycoplasma genitalium reference genome
  download_best_assembly.R 2097
' -> doc

arguments <- docopt(doc)

#print(arguments)

download_best_assembly(taxid_of_interest = arguments$taxid_of_interest)