gemini_prepare_input: Prepare input before Model creation

In sellerslab/gemini: GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens

Prepare input before Model creation

Description

This is an internal function to GEMINI, allowing for data cleanup and preprocessing before a Model object is created. This removes any gene pairs targeting the same gene twice, and removes any empty samples/replicates.

Usage

gemini_prepare_input(Input, gene.columns, sample.col.name = "samplename")

Arguments

Input	An object of class gemini.input
gene.columns	a character vector of length(2)
sample.col.name	a character indicating the name of the sample column (default = "samplename")

Value

a (prepared) gemini.input object

Examples

data("Input", package = "gemini")
Input %<>% gemini_prepare_input(gene.columns = c("U6.gene", "H1.gene"))

sellerslab/gemini documentation built on Dec. 5, 2022, 8:56 a.m.