Files in sellerslab/gemini
GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens
.Rbuildignore
.github/ISSUE_TEMPLATE/bug_report.md
.github/ISSUE_TEMPLATE/feature_request.md
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
NEWS.md
R/bigpapi-data.R
R/gemini_boxplot.R
R/gemini_calculate_lfc.R
R/gemini_create_input.R
R/gemini_inference.R
R/gemini_initialize.R
R/gemini_parallelization.R
R/gemini_plot_mae.R
R/gemini_prepare_input.R
R/gemini_score.R
R/initialize_s.R
R/initialize_tau.R
R/initialize_x.R
R/initialize_y.R
R/update_mae.R
R/update_s_pb.R
R/update_tau_pb.R
R/update_x_pb.R
R/update_y_pb.R
R/utility.R
README.Rmd
README.md
data/Input.rda
data/Model.rda
data/counts.rda
data/guide.annotation.rda
data/sample.replicate.annotation.rda
inst/figs/gemini_multicore.png
man/Input.Rd
man/Model.Rd
man/Sgene2Pguides_hash.Rd
man/Sguide2Pguides_hash.Rd
man/compound.Rd
man/counts.Rd
man/dot-median_normalize.Rd
man/gemini_boxplot.Rd
man/gemini_calculate_lfc.Rd
man/gemini_create_input.Rd
man/gemini_inference.Rd
man/gemini_initialize.Rd
man/gemini_parallelization.Rd
man/gemini_plot_mae.Rd
man/gemini_prepare_input.Rd
man/gemini_score.Rd
man/guide.annotation.Rd
man/initialize_s.Rd
man/initialize_tau.Rd
man/initialize_x.Rd
man/initialize_y.Rd
man/pipe.Rd
man/sample.replicate.annotation.Rd
man/update_mae.Rd
man/update_s_pb.Rd
man/update_tau_pb.Rd
man/update_x_pb.Rd
man/update_y_pb.Rd
tests/testthat.R
tests/testthat/test_data.R
tests/testthat/test_plots.R
vignettes/gemini-quickstart.Rmd
