In sellerslab/gemini: GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens

knitr::opts_chunk$set(
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gemini

The gemini package allows users to analyze combinatorial CRISPR screens as described in Zamanighomi et al. ?.

Installation

To install the latest development version of gemini, use the devtools package as follows:

devtools::install_github(repo = "sellerslab/gemini", build_vignettes = TRUE)

You can (eventually) install the stable release version of gemini from Bioconductor with:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")
BiocManager::install("gemini")

Details

See the vignette for usage instructions:

vignette("gemini-quickstart", package = "gemini")

sellerslab/gemini documentation built on Dec. 5, 2022, 8:56 a.m.