sellerslab/gemini: GEMINI: Variational inference approach to infer genetic interactions from pairwise CRISPR screens

GEMINI uses log-fold changes to model sample-dependent and independent effects, and uses a variational Bayes approach to infer these effects. The inferred effects are used to score and identify genetic interactions, such as lethality and recovery. More details can be found in Zamanighomi et al. 2019 (in press).

Getting started

Package details

Bioconductor views Bayesian CRISPR DataImport Software
LicenseBSD_3_clause + file LICENSE
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
sellerslab/gemini documentation built on Dec. 5, 2022, 8:56 a.m.