README.md

In seqpipe/SCclust: Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones

SCclust R package

Please note that this software is still under construction and not ready for general use

The SCclust package implements feature selection based on breakpoints, permutations for FDRs for Fisher test p-values and identification of the clone structure in single cell copy number profiles.

Installation from source

• Download SCclust package source build from Github: https://github.com/KrasnitzLab/SCclust/releases/download/v1.0.0/SCclust_1.0.0.tar.gz into your working directory;

• Install the package from downloaded source:

  install.packages("SCclust_1.0.0.tar.gz")

Conda installer

• The SCclust package can also be installed using KrasnitzLab Anaconda channel:

  conda install -c krasnitzlab scclust

seqpipe/SCclust documentation built on May 4, 2021, 11:56 a.m.