segment_varbin_files: Generate the segmented profile for each cell.
In seqpipe/SCclust: Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones
Description
Usage
Arguments
Value
Description
Generate the segmented profile for each cell in the input directory using CBS.
Usage
1
segment_varbin_files(varbin_files, gc_df, badbins = NULL)
Arguments
varbin_files
list of bin count files for all cells produced by
'varbin' step of 'sgains' package.
gc_df
binning scheme used for the analysis.
badbins
list of bins that should be excluded from the analysis.
Value
The list containing seg quantal and ratio quantal matrix for all cells.
seqpipe/SCclust documentation built on May 4, 2021, 11:56 a.m.
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Description Usage Arguments Value
Description
Generate the segmented profile for each cell in the input directory using CBS.
Usage
1 | segment_varbin_files(varbin_files, gc_df, badbins = NULL)
|
Arguments
varbin_files |
list of bin count files for all cells produced by 'varbin' step of 'sgains' package. |
gc_df |
binning scheme used for the analysis. |
badbins |
list of bins that should be excluded from the analysis. |
Value
The list containing seg quantal and ratio quantal matrix for all cells.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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