Files in seqpipe/SCclust
Clustering of Single Cell Sequencing Copy Number Profiles to Identify Clones
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/cbs_segment.R
R/file_utils.R
R/find_clones.R
R/find_subclones.R
R/fisher_fdr.R
R/hclust_tree.R
R/pinmat.R
R/pipeline.R
R/simfisher.R
R/utils.R
README.md
SCclust.Rproj
SCclust.pdf
_Jenkinsfile
inst/doc/SCclust.R
inst/doc/SCclust.Rmd
inst/doc/SCclust.html
inst/doc/SCclust.pdf
man/calc_bins2regions.Rd
man/calc_centroareas.Rd
man/calc_pinmat.Rd
man/calc_ploidies.Rd
man/calc_regions2bins.Rd
man/case_filenames.Rd
man/chrom_numeric.Rd
man/find_clones.Rd
man/find_subclones.Rd
man/fisher_dist.Rd
man/fisher_fdr.Rd
man/hclust_tree.Rd
man/segment_varbin_files.Rd
man/sgains_pipeline.Rd
man/sim_fisher_wrapper.Rd
man/tree_py.Rd
man/varbin_input_files.Rd
run_jenkins_tests.R
run_tests.R
tests/.gitignore
tests/testthat.R
tests/testthat/.gitignore
tests/testthat/fixtures/table.txt
tests/testthat/fixtures/table.txt.bz2
tests/testthat/fixtures/table.txt.gz
tests/testthat/test_fileutils.R
vignettes/.gitignore
vignettes/SCclustVignettes.Rmd
vignettes/SCclustVignettes.pdf
