addBooleanGate | Adds a boolean gate to the GatingSet or GatingSetList |
boxplot.boolean.subset.proportions | Boxplot of the difference in cell proportions for a given... |
boxplot.cell.counts | Plot cell counts for each sample (default CD3+ cells) |
boxplotsCompassSubsetBgCorrPropStratified | Create Stratified Boxplots of the Background Corrected... |
boxplot.subset.proportion.stats | Stratified Boxplots of the Proportion of the Boolean/Existing... |
compass.subset.comparisons | COMPASS Subset Comparisons |
cytokine.specific.subset.comparison | Cytokine-specific Subset Comparison |
fs.line.plot | Line plot of Functionality Score vs. some other axis |
fs.plot | Plot of Functionality Score vs some other axis |
generic.compass.wrapper | COMPASS Wrapper |
getCatsAndSubsetNames | Format COMPASS Categories |
highlight.boolean.subset.flow.plot | Overlay and Highlight Polyfunctional Cell Subsets on a Flow... |
lineplot.boolean.subset.proportions | lineplot.boolean.subset.proportions |
orderHeatmapColumnsByCytokinePresence | Order COMPASSresult categories columns for cytokine of... |
prepare.gating.set.list.4.compass | Prepare flow data for COMPASS |
run.compass.once | Run COMPASS once |
runOneSense | A function to run One-SENSE. Has an additional... |
runTSNE | Run tSNE from (R pkg 'Rtsne') on a GatingSet |
sampleGatingSetForTsne | Sample a GatingSet |
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