runOneSense: A function to run One-SENSE. Has an additional...

In seshadrilab/flowHelpers: Collection of helper functions for analyzing FCM data

Description

Note lack of numThreads argument. Multicore tsne doesn't work for One-SENSE (i.e. dims = 1). Since the input matrix dimensions will be smaller, it seems that multicore tsne might not provide much of a speed-up anyway. See: https://github.com/DmitryUlyanov/Multicore-TSNE#what-to-expect

Usage

runOneSense(gs = NULL, parentGate = NULL, degreeFilterGates = c(),
  otherGates = c(), tsneMarkers = c(), groupBy = c(),
  degreeFilter = 0, seed = 999, theta = 0.9, cloneGs = TRUE,
  dimensionMarkers = list(), n = NULL, ...)

Arguments

dimensionMarkers

a list of character vectors, containing the markers which are to be run for each One-SENSE dimension

seshadrilab/flowHelpers documentation built on May 23, 2019, 4:05 a.m.