sampleGatingSetForTsne: Sample a GatingSet

Description Usage Arguments Value

View source: R/runTSNE.R

Description

Sample a GatingSet

Usage

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sampleGatingSetForTsne(gs = NULL, parentGate = NULL, groupBy = c(),
  n = NULL, seed = 999, cloneGs = TRUE)

Arguments

gs

a GatingSet object or path to a GatingSet directory, properly gated data with annotation in its pData

parentGate

a string describing the gate upstream of the cytokine gates (eg. "CD4", "cd8+", etc...)

groupBy

a vector of strings describing columns of the gatingSet's phenoData.

n

use this to optionally specify the size of each group in the first category of the groupBy vector

Value

a sampled GatingSet


seshadrilab/flowHelpers documentation built on May 23, 2019, 4:05 a.m.