normalize_metabolomics: Normalize Metabolomics
In shackett/fluxr: Tidying Metabolism
Description
Usage
Arguments
Details
Value
Examples
Description
Using a robust metabolomics normalization rescale ion counts based on the consensus signal of each sample.
Usage
1
normalize_metabolomics(metabolomics_data)
Arguments
metabolomics_data
a tidy data.frame generated from read_MAVEN_data
Details
This normalization was reported in Kamphorst et al. 2015, see https://github.com/shackett/Pancreatic_tumor_metabolomics.
Value
metabolomics_data with an added column containing normalized ion counts
Examples
1
2
directory = system.file("extdata", "maven_axon.xlsx", package = "fluxr")
normalize_metabolomics(read_MAVEN_data(directory)$metabolomics_data)
shackett/fluxr documentation built on May 29, 2019, 8:06 p.m.
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Description Usage Arguments Details Value Examples
Description
Using a robust metabolomics normalization rescale ion counts based on the consensus signal of each sample.
Usage
1 | normalize_metabolomics(metabolomics_data)
|
Arguments
metabolomics_data |
a tidy data.frame generated from |
Details
This normalization was reported in Kamphorst et al. 2015, see https://github.com/shackett/Pancreatic_tumor_metabolomics.
Value
metabolomics_data with an added column containing normalized ion counts
Examples
1 2 | directory = system.file("extdata", "maven_axon.xlsx", package = "fluxr")
normalize_metabolomics(read_MAVEN_data(directory)$metabolomics_data)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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