Files in shadieshghi/TargetedMSQC
TargetedMSQC for Automated Quality Assessment of Targeted Mass Spectrometry Data
.Rbuildignore
.gitignore
DESCRIPTION
NAMESPACE
R/TargetedMSQC.R
R/dataprep.R
R/definitions.R
R/metrics.R
R/plots.R
R/startup.R
R/training.R
TargetedMSQC.Rproj
data/data.CSF.rda
data/data.features.CSF.rda
data/data.set.CSF.rda
data/model.rrf.CSF.rda
inst/extdata/CSF_Panel/Chromatograms/CSF_Biomarkers.tsv
inst/extdata/CSF_Panel/Features/features.csv
inst/extdata/CSF_Panel/Peak_boundary/CSF_Biomarkers.csv
inst/extdata/CSF_Panel/Reports/CSF_Biomarkers_TargetedMSQC_report_class.pdf
inst/extdata/CSF_Panel/Reports/CSF_Biomarkers_TargetedMSQC_report_class_probability.pdf
inst/extdata/CSF_Panel/Skyline_files/CSF_Biomarkers.sky.zip
inst/extdata/CSF_Panel/Templates/CSF_Biomarkers_training_template.csv
inst/extdata/CSF_Panel/Training/CSF_Biomarkers_training_annotated.csv
man/ApplyPeakBoundary.Rd
man/ApplyQCModel.Rd
man/BuildPeakGroup.Rd
man/CalculateElutionShift.Rd
man/CalculateFWHM.Rd
man/CalculateJaggedness.Rd
man/CalculateMaxBoundaryIntensity.Rd
man/CalculateModality.Rd
man/CalculatePeakElutionShift.Rd
man/CalculatePeakJaggedness.Rd
man/CalculatePeakMaxIntensity.Rd
man/CalculatePeakShapeSimilarity.Rd
man/CalculatePeakSymmetry.Rd
man/CalculateTransitionSum.Rd
man/CleanUpChromatograms.Rd
man/ExtractFeatures.Rd
man/MakeDataSet.Rd
man/MakeTemplate.Rd
man/PlotChromPeak.Rd
man/PlotQCReport.Rd
man/TargetedMSQC.Rd
man/TrainQCModel.Rd
man/ViolinPlotQCSummary.Rd
man/is.na-peakObj-method.Rd
man/peakObj-class.Rd
vignettes/QC_Metrics_Table.pdf
vignettes/TargetedMSQC.Rmd
