totalcn_chrom_plot: Plot total copy number split per chromosome

In shaghayeghsoudi/Battenberg_customized: Battenberg subclonal copy number caller

Description

This plot contains estimated total copy number from logR, the copy number fit in different colours and a few general stats. It is meant as a single figure replacement for the per chromosome subclones.png figures that can be used for refitting.

Usage

totalcn_chrom_plot(samplename, subclones, logr, outputfile, purity)

Arguments

samplename	Name of the sample for the plot title
subclones	A subclones.txt file read in as a data.frame
logr	The raw logR read in as a data.frame
outputfile	Full path of file where the figure is to be stored
purity	The samples purity estimate

Author(s)

sd11

shaghayeghsoudi/Battenberg_customized documentation built on Feb. 13, 2022, 4:10 a.m.