R/data.R

In shambam/cellexalvrR: Provides the backend calculations for CellexalVR

#' A list of mouse transcription factors.
#'
#' A list of mouse transcription factors. Used when generating TF networks
#'
#' @format A vector 1357 in length:
#' \describe{
#'   \item{tf}{transcription factor}
#'   ...
#' }
#' @source \url{http://bioinfo.life.hust.edu.cn/AnimalTFDB/}
"mouse.tfs"

#' A list of human transcription factors.
#'
#' A list of human transcription factors. Used when generating TF networks
#'
#' @format A vector 1468 in length:
#' \describe{
#'   \item{tf}{transcription factor}
#'   ...
#' }
#' @source \url{http://bioinfo.life.hust.edu.cn/AnimalTFDB/}
"human.tfs"

#' @name Epigenetic
#' @title A simple table containing the data from http://epifactors.autosome.ru/ as from 21st September 2017
#' @description This table can be used to create the epigenetics MDS objects.
#' @docType data
#' @usage Epigenetic
#' @format data.frame
'Epigenetic'