Files in shanawhite-UC/KEGGlincs
Visualize all edges within a KEGG pathway and overlay LINCS data
.Rbuildignore
.gitignore
DESCRIPTION
KEGGlincs.Rproj
NAMESPACE
NEWS
R/KEGG_lincs.R
R/KEGGlincs.R
R/KL_compare.R
R/add_edge_data.R
R/cyto_vis.R
R/edge_mapping_info.R
R/expand_KEGG_edges.R
R/expand_KEGG_mappings.R
R/from_cyREST.R
R/generate_mappings.R
R/get_KGML.R
R/get_fisher_info.R
R/get_graph_object.R
R/keggerize_edges.R
R/node_mapping_info.R
R/overlap_info.R
R/path_genes_by_cell_type.R
R/refine_mappings.R
R/tidy_edge.R
README.md
inst/CITATION
man/KEGG_lincs.Rd
man/KEGGlincs.Rd
man/KL_compare.Rd
man/add_edge_data.Rd
man/cyto_vis.Rd
man/edge_mapping_info.Rd
man/expand_KEGG_edges.Rd
man/expand_KEGG_mappings.Rd
man/generate_mappings.Rd
man/get_KGML.Rd
man/get_fisher_info.Rd
man/get_graph_object.Rd
man/keggerize_edges.Rd
man/node_mapping_info.Rd
man/overlap_info.Rd
man/path_genes_by_cell_type.Rd
man/refine_mappings.Rd
man/tidy_edge.Rd
man/toCytoscape.Rd
vignettes/Example-workflow.Rmd
vignettes/image_files/KEGGlincs_overview.jpeg
vignettes/image_files/color_1.svg
vignettes/image_files/color_2.svg
vignettes/image_files/foxo_ID_conversion.jpeg
vignettes/image_files/foxo_no_IDconversion.jpeg
vignettes/image_files/hsa04068.png
vignettes/image_files/p53_HA1E.jpeg
vignettes/image_files/p53_HA1E_vignette.jpeg
vignettes/image_files/p53_PC3.jpeg
vignettes/image_files/p53_PC3_vignette.jpeg
vignettes/image_files/p53_coverage_graph.png
vignettes/image_files/p53_default.jpeg
vignettes/image_files/random_KO_info.jpeg
