expand_KEGG_edges: Get detailed KEGG mapping information for each relation...

Description Usage Arguments Value Examples

Description

Extract relationship information from KGML object and re-map based on normalized node information

Usage

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expand_KEGG_edges(KGML_file, KEGG_mappings)

Arguments

KGML_file

An object of formal class KEGGPathway

KEGG_mappings

The data.frame object generated by the function expand_KEGG_mappings

Value

A dataframe object with unique entry information for all edges documented in the KEGG pathway. Note that each row has a unique combination of values for (entry1, entry2, entry1symbol, entry2symbol).

Examples

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p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE)
p53_edges <- expand_KEGG_edges(p53_KGML, p53_KEGG_mappings)

shanawhite-UC/KEGGlincs documentation built on May 29, 2019, 8:07 p.m.