node_mapping_info: Prepare nodes for mapping
In shanawhite-UC/KEGGlincs: Visualize all edges within a KEGG pathway and overlay LINCS data
Description
Usage
Arguments
Value
Examples
Description
Modify the mapping information for desired look when graphed
in Cytoscape
Usage
1
node_mapping_info(KEGG_mappings)
Arguments
KEGG_mappings
The data.frame object generated by the function
expand_KEGG_mappings()
Value
A data.frame object for nodes that will be passed on to the function
get_graph_object
Examples
1
2
3
4
p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE)
p53_node_mapping_info <- node_mapping_info(p53_KEGG_mappings)
shanawhite-UC/KEGGlincs documentation built on May 29, 2019, 8:07 p.m.
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Description Usage Arguments Value Examples
Description
Modify the mapping information for desired look when graphed in Cytoscape
Usage
1 | node_mapping_info(KEGG_mappings)
|
Arguments
KEGG_mappings |
The data.frame object generated by the function expand_KEGG_mappings() |
Value
A data.frame object for nodes that will be passed on to the function get_graph_object
Examples
1 2 3 4 | p53_KGML <- get_KGML("hsa04115")
p53_KEGG_mappings <- expand_KEGG_mappings(p53_KGML, FALSE)
p53_node_mapping_info <- node_mapping_info(p53_KEGG_mappings)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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