TF_target_database: TF-target database

In shangguandong1996/FindIT2: find influential TF and Target based on multi-omics data

TF-target database

Description

TF-target database

Usage

data(TF_target_database)

Format

a data frame

Source

http://bioinformatics.psb.ugent.be/webtools/iGRN/pages/download

Examples

## Not run: 
# source
library(dplyr)
data <- read.table("~/reference/annoation/Athaliana/TF_target/iGRN_network_full.txt",
                  sep = "\t",
                  stringsAsFactors = FALSE)

data %>%
rename(TF_id = V1, target_gene = V2) %>%
select(TF_id, target_gene) %>%
TF_target_database <- filter(TF_id %in% c("AT1G28300",
"AT5G63790", "AT5G24110", "AT3G23250")) %>%
as.data.frame()

save(TF_target_database, file = "inst/extdata/TF_target_database.rda", version = 2,
     compress = "bzip2")


## End(Not run)

shangguandong1996/FindIT2 documentation built on March 1, 2024, 8:34 p.m.