jaccard_findIT_TTpair: jaccard_findIT_TTpair

In shangguandong1996/FindIT2: find influential TF and Target based on multi-omics data

jaccard_findIT_TTpair

Description

jaccard_findIT_TTpair

Usage

jaccard_findIT_TTpair(input_genes, TF_target_database, input_TF_id)

Arguments

input_genes	a character vector which represent gene set which you want to find influential TF for (same as your find_IT_TTpair parameter)
TF_target_database	TF_target pair data
input_TF_id	TF_id which you want to calculate jaccard index for

Value

jaccard similarity matrix

Examples

data("TF_target_database")
data("test_geneSet")
result_findIT_TTPair <- findIT_TTPair(
    input_genes = test_geneSet,
    TF_target_database = TF_target_database
)

jaccard_findIT_TTpair(
    input_genes = test_geneSet,
    TF_target_database = TF_target_database,
    input_TF_id = result_findIT_TTPair$TF_id[1:3]
)

shangguandong1996/FindIT2 documentation built on March 1, 2024, 8:34 p.m.