findIT_TTPair: findI(nfluential)T(F)_T(F)T(arget)Pair

In shangguandong1996/FindIT2: find influential TF and Target based on multi-omics data

findI(nfluential)T(F)_T(F)T(arget)Pair

Description

find influential TF of your input gene set based on public TF-Target data

Usage

findIT_TTPair(
  input_genes,
  TF_target_database,
  gene_background = NULL,
  TFHit_min = 5,
  TFHit_max = 10000
)

Arguments

input_genes	a character vector which represent genes set which you want to find influential TF for
TF_target_database	TF_target pair data with two column named TF_id and target_gene
gene_background	a character vector represent your bakcaground gene. If you do not assign background gene, program will consider all target gene as background
TFHit_min	minimal size of target gene regulated by TF
TFHit_max	maximal size of target gene regulated by TF

Value

data.frame

Examples

data("TF_target_database")
data("test_geneSet")

result_findIT_TTPair <- findIT_TTPair(
    input_genes = test_geneSet,
    TF_target_database = TF_target_database
)

shangguandong1996/FindIT2 documentation built on March 1, 2024, 8:34 p.m.