Description Usage Arguments Value
the plotNetworkPathway function plots network graphs with most represented pathways labelled
1 2 | plotNetworkPathway(sigPairsList, minCommunity = 10, pathways = NULL,
geneUniverse = NULL)
|
sigPairsList |
list of significant pairs for branches, in igraph network form |
minCommunity |
minimum number of genes in community to annotate most represented |
pathways |
is a named list containing gene sets for querying, if left NULL defaults to REACTOME c2.all.v6.1.symbols.gmt downloaded from MSigDB |
geneUniverse |
is the universe of genes measured, if null its taken as all the sigpairs |
plot
plots of igraph objects
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