plotNetworkPathway: plotNetworkPathway

Description Usage Arguments Value

Description

the plotNetworkPathway function plots network graphs with most represented pathways labelled

Usage

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plotNetworkPathway(sigPairsList, minCommunity = 10, pathways = NULL,
  geneUniverse = NULL)

Arguments

sigPairsList

list of significant pairs for branches, in igraph network form

minCommunity

minimum number of genes in community to annotate most represented

pathways

is a named list containing gene sets for querying, if left NULL defaults to REACTOME c2.all.v6.1.symbols.gmt downloaded from MSigDB

geneUniverse

is the universe of genes measured, if null its taken as all the sigpairs

Value

plot plots of igraph objects


shazanfar/DCARS documentation built on Oct. 14, 2020, 11:11 a.m.