Description Usage Arguments Value
the plotWcorsClusterPathway function plots network graphs with most represented pathways labelled
1 2 3 | plotWcorsClusterPathway(sigWcorsList, pathways = hallmarks,
geneUniverse = NULL, cutk = 15, topPathways = 2, cluster = FALSE,
label_wrap_cut = 20)
|
sigWcorsList |
named list of weighted correlation matrices per branch, rows are gene pairs and columns are ordered samples, if it is not a list it will be converted into a list |
pathways |
is a named list containing gene sets for querying, if left NULL defaults to REACTOME c2.all.v6.1.symbols.gmt downloaded from MSigDB |
geneUniverse |
is the universe of genes measured, if null its taken as all the genes in the sigWcorsList |
cutk |
number of weighted correlation clusters to cut hclust |
topPathways |
is the top number of pathways to plot |
cluster |
is a logical if pathway and weighted correlation clustering should be performed |
label_wrap_cut |
number of letters to wrap for labelling heatmap |
plot
plots of igraph objects
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.