shazanfar/scHOT: single-cell higher order testing

Single cell Higher Order Testing (scHOT) is an R package that facilitates testing changes in higher order structure of gene expression along either a developmental trajectory or across space. scHOT is general and modular in nature, can be run in multiple data contexts such as along a continuous trajectory, between discrete groups, and over spatial orientations; as well as accommodate any higher order measurement such as variability or correlation. scHOT meaningfully adds to first order effect testing, such as differential expression, and provides a framework for interrogating higher order interactions from single cell data.

Getting started

Package details

Bioconductor views GeneExpression RNASeq Sequencing SingleCell Software Transcriptomics
Maintainer
LicenseGPL-3
Version0.99.6
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("shazanfar/scHOT")
shazanfar/scHOT documentation built on May 21, 2020, 1:13 a.m.