scHOT_stripOutput: scHOT_stripOutput

In shazanfar/scHOT: single-cell higher order testing

scHOT_stripOutput

Description

Strip the scHOT output

Usage

scHOT_stripOutput(scHOT, force = TRUE, store = FALSE, file_name = NULL)

Arguments

scHOT	A scHOT object
force	A logical indicates whther forcing stripping the scHOT output
store	A logical flag on whether the scHOT should be stored as .rds file
file_name	A string indicates the file name of the scHOT will be stored

Value

A scHOT object with scHOT_output striped

Examples

data(MOB_subset)
sce_MOB_subset <- MOB_subset$sce_MOB_subset
scHOT_spatial <- scHOT_buildFromSCE(sce_MOB_subset,
                                     assayName = "logcounts",
                                    positionType = "spatial",
                                     positionColData = c("x", "y"))

scHOT_spatial <- scHOT_stripOutput(scHOT_spatial)

shazanfar/scHOT documentation built on June 29, 2023, 5:29 p.m.